How many 'versions' of the holy Quran is there today؟
At least two, probably more (I am pretty sure about the third
one, but can't prove it yet, so I am not going to say where and
what just yet), but it is common knowledge that the Hafs text
and the Warsh text (mainly used in Northwest Africa) are
different not only in the vowels but also in some consonants.
The differences are small, but they are there. And both of them
are for sale and in use today. Hafs is the much more common one.
The third version I have heard about has by far more substantial
differences in comparison to the other two. For the Warsh and
Hafs differences see a few examples at:
http://answering-Islam.org/Quran/Text/warsh.html